Friday, February 22, 2008

Modified electron microscope identifies atoms

A new electron microscope recently installed in Cornell's Duffield Hall enables scientists for the first time to form images that uniquely identify individual atoms in a crystal and see how those atoms bond to one another. And in living color.

K.S.Parthasarathy



Public release date: 21-Feb-2008
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Contact: Blaine Friedlander
bpf2@cornell.edu
607-254-8093
Cornell University Communications
Modified electron microscope identifies atoms

A new electron microscope recently installed in Cornell's Duffield Hall is enabling scientists for the first time to form images that uniquely identify individual atoms in a crystal and see how those atoms bond to one another. And in living color.

"The current generation of electron microscopes can be thought of as expensive black and white cameras where different atoms appear as different shades of gray," explained David Muller, Cornell associate professor of applied and engineering physics. "This microscope takes color pictures -- where each colored atom represents a uniquely identified chemical species."

The instrument is a new type of scanning transmission electron microscope (STEM), built by the NION Company of Kirkland, Wash., under an instrument-development award to Cornell from the National Science Foundation (NSF). John Silcox, the David E. Burr Professor of Engineering at Cornell, and Ondrej Krivanek of NION are co-principal investigators on the project.

The microscope incorporates new aberration-correction technology designed by Krivanek that focuses a beam of electrons on a spot smaller than a single atom -- more sharply and with greater intensity than previously possible. This allows information previously hidden in the background, or "noise," to be seen. It also provides up to a hundredfold increase in imaging speed.

The capabilities of the new instrument in analyzing a test sample are described in an article in the Feb. 22 issue of the journal Science by Muller, Silcox, Krivanek and colleagues at Cornell and in Korea and Japan.

It allows scientists to peer inside a material or a device and see how it is put together at the atomic scale where quantum effects dominate and everyday intuition fails. One of the most important applications of the new instrument will be to conduct what Silcox calls "materials pathology" to aid researchers in their development of new materials to use in electronic circuits, computer memories and other nanoscale devices. "We can look at structures people have built and tell them if they've built what they thought they did," Silcox explained.

A STEM shoots an electron beam through a thin-film sample and scans the beam across the sample in subatomic steps. In addition to forming an image, the new microscope can identify atoms in its path by a process called electron energy-loss spectrometry. Atoms in the path of the beam absorb energy from some of its electrons to kick their own electrons into higher orbits. The amount of energy this takes is different for each kind of atom.

The detector that collects electrons emerging from the sample measures the energy losses, and from this the atoms in the path of the beam can be identified. The detector can simultaneously produce multiple images -- one for every different species of atom in the sample, and these can be color-coded, each color representing a different electron energy signature.

The method also can show how atoms are bonded to one another in a crystal, because the bonding creates small shifts in the energy signatures. In earlier STEMS, many electrons from the beam, including those with changed energies, were scattered at wide angles by simple collisions with atoms. The new STEM includes magnetic lenses that collect emerging electrons over a wider angle. Previously, Silcox said, about 8 percent of the emerging electrons were collected, but the new detector collects about 80 percent, allowing more accurate readings of the small changes in energy levels that reveal bonding between atoms.

More complete collection and a brighter and a more sharply focused beam also allow the new microscope to scan much faster. In early tests it collected a 4,096-pixel image in about 30 seconds, 50 to 100 times faster than in conventional STEMs.

To demonstrate the capability of the new instrument, Muller examined a sample consisting of layers of two different materials: lanthanum-strontium-manganese oxide and strontium-titanate. This was done as part of a research project on which he is collaborating with scientists in Korea and Japan. "It's an artificial structure that will have interesting magnetic and electrical properties," he said, "but for it to work properly we have to make atomically sharp interfaces between the layers. It's really important to know if a few atoms leaked across the interface."

In the color image from the new STEM, where manganese appears red and titanium blue, a line of purple shows mixing at the edge between the two layers. "We've learned that there's room for improvement," Muller says, adding "This wasn't our best sample, but if we had put that one in it would have been a fairly boring image."

The new instrument arrived at Cornell in October, and is still undergoing calibration and testing.

The problems that limited electron imaging were identified as long ago as 1935, Silcox said, and ideas for overcoming them were outlined in 1947. But it was not until very recently that the engineering obstacles to putting them into practice were overcome. Largely, he said, this is because the problem required advanced computing, including computers to design the instrument, computer-controlled machinery to manufacture parts to fine tolerances, and computers to control the instrument itself.

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Friday, February 15, 2008

Remarkable new clothing may someday power your iPod

It is appropriate that technologists are trying to make "small" power generators for use with cell phones and IPODS. Once perfected they will have a huge market. The report published in the February issue of Nature explains an effort in that direction.

K.S.Parthasarathy




Public release date: 13-Feb-2008
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Contact: Diane Banegas
dbanegas@nsf.gov
703-292-4489
National Science Foundation
Remarkable new clothing may someday power your iPod
The promise of piezoelectric fiber pairs
A schematic illustration of a "bottle-brush " structure shows nanowires arranged around a fiber. The relative "scrubbing " of the two brushes generates electricity.
Click here for more information.

Nanotechnology researchers at the Georgia Institute of Technology are developing a shirt that harvests energy from the wearer's physical motion and converts it into electricity for powering small electronic devices worn by soldiers in the field, hikers and other users.

The research, funded by the National Science Foundation (NSF) and described in the Feb. 14 issue of Nature, details how pairs of textile fibers covered with zinc oxide nanowires generate electricity in response to applied mechanical stress. Known as "the piezoelectric effect," the resulting current flow from many fiber pairs woven into a shirt or jacket could allow the wearer's body movement to power a range of portable electronic devices. The fibers could also be woven into curtains, tents or other structures to capture energy from wind motion, sound vibration or other mechanical energy.
The Georgia Tech research team for fiber nanogenerators: (left to right) Zhong Lin Wang, Xudong Wang and Yong Qin.
Click here for more information.

"The two fibers scrub together just like two bottle brushes with their bristles touching, and the piezoelectric-semiconductor process converts the mechanical motion into electrical energy," Zhong Lin Wang, a Regents professor in the School of Materials Science and Engineering at the Georgia Institute of Technology. "Many of these devices could be put together to produce higher power output."

Wang and collaborators Xudong Wang and Yong Qin have made more than 200 of the fiber nanogenerators. Each is tested on an apparatus that uses a spring and wheel to move one fiber against the other. The fibers are rubbed together for up to 30 minutes to test their durability and power production.

The researchers have measured current of about four nanoamperes and output voltage of about four millivolts from a nanogenerator that included two fibers that were each one centimeter long. With a much improved design, Wang estimates that a square meter of fabric made from the special fibers could theoretically generate as much as 80 milliwatts of power.

So far, there is only one wrinkle in the fabric, so to speak - washing it. Zinc oxide is sensitive to moisture, so in real shirts or jackets, the nanowires would have to be protected from the effects of the washing machine.

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The research was funded by NSF's Division of Materials Research through grant #0706436. "This multi-disciplinary research grant enables materials scientists and engineers from varied backgrounds to work together towards translating basic and applied research into viable technologies," said NSF Program Manager Harsh Deep Chopra. The research also was sponsored by the U.S. Department of Energy, and the Emory-Georgia Tech Nanotechnology Center for Personalized and Predictive Oncology.

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Sunday, February 10, 2008

Iron banded worms drying out of blood could be linked to Parkinson's and Alzheimer's

A very interesting paper from scientists in India and the UK
K.S.Parthasarathy



Public release date: 9-Feb-2008
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Contact: Peter Sadler
p.j.sadler@warwick.ac.uk
44-024-765-23653
University of Warwick
Iron banded worms drying out of blood could be linked to Parkinson's and Alzheimer's
Professor Sadler with diagram of iron banded fibril.
Click here for more information.

Researchers at the University of Warwick and the Indian Institute of Technology Kanpur have discovered that the mechanism that we rely on to transport iron safely through our blood stream can, in certain circumstances, collapse into a state which grows long worm-like “fibrils” banded by lines of iron rust. This process could provide the first insight into how iron gets deposited in the brain to cause some forms of Parkinson’s & Alzheimer’s and Huntington’s diseases.

Human blood relies on a protein called transferrin to safely transport iron through the bloodstream to points were it can be usefully and safely used in the body. In most other circumstances exposed iron contains many dangers for human cells. When deposited in such a state in the brain it can play a role in neurodegenerative diseases such as Parkinson’s, Huntington’s and Alzheimer’s

Transferrin takes up iron out of bloodstream and transports it by a method that combines it with carbonate to bind to two sites on the surface of the transferrin protein. It then curls around the iron and seals it in, almost like a Venus flytrap plant, to prevent it from interacting with anything else until it reaches where it is needed and can safely be used.

The research team led by Professor Peter Sadler from the University of Warwick, and Professor Sandeep Verma from the Indian Institute of Technology, found that if they took transferrin and left it to dry out on a surface, molecules of the safe transporter of iron assembled themselves into tendril - or worm-like fibrils. Even more interestingly the iron that was once safely wrapped up inside the transferrin now appeared to be settling along the length of these fibrils plating them in a series of spots or bands along the length of the tendril shape. This leaves the iron dangerously exposed and available to interact in ways that could cause cell damage.

Deposits of iron exposed in this way and found in the brain are a possible cause of some forms of Parkinson’s, Alzheimer’s and Huntington’s diseases. Until now there has been no real idea as to how iron becomes deposited there in such a dangerous way. As it is essential for the brain to have iron safely delivered to it, this observation could provide the first real clue as to how that iron comes to be deposited there in such a dangerous way. The research chemists who led this study hope that neurology researchers will be able to build on this work to gain more understanding of how these forms of Parkinson’s, Huntington’s and Alzheimer’s occur and how they can be countered.

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The full research paper entitled Periodic Iron Nanomineralization in Human Serum Transferrin Fibrils, by Surajit Ghosh, Arindam Mukherjee, Peter J. Sadler, Sandeep Verma, has just been published in the online edition of Angewandte Chemie. The lead authors are Professor Peter Sadler from the University of Warwick, and Professor Sandeep Verma from the Indian Institute of Technology.

For further information please contact:

Professor Peter Sadler, Department of Chemistry University of Warwick Tel: +44 (0)24 7652 3653
Mobile/cell : +44 (0)7824 540980
Email: p.j.sadler@warwick.ac.uk

Professor Sandeep Verma, Department of Chemistry IIT Kanpur, Kanpur-208016 (UP), India
Tel: +91-(0512)-2597643 sverma@iitk.ac.in

Peter Dunn, Press and Media Relations Manager, Communications Office, University of Warwick,
+44 (0)24 76 523708 or mobile/cell +44 (0)7767 655860
email: p.j.dunn@warwick.ac.uk

High res Picture of Professor Sadler with diagram of Iron banded fibril available at:
http://mms.warwick.ac.uk/mms/getMedia/D509EDCC89CDF37B01ECED6D8D8020BE.jpg

Thursday, February 7, 2008

PET outperforms CT in characterization of lung nodules

While screening healthy volunteers, specialists found that 7 percent of 1000 persons had between one or three nodules.In patients with an untreated and undiagnosed solitary pulmonary nodules (SPN) between 7 and 30 millimeters, PET provides better identification of malignant nodules that require a more aggressive treatment approach. PET in combination with CT can also provide good identification of those nodules that are most likely to be benign, suggesting that a ‘watch and wait’ strategy can be adopted in lieu of unnecessary invasive—and expensive—procedures such as needle biopsy or surgery.

K.S.Parthasarathy



Public release date: 6-Feb-2008
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Contact: Kathryn Wiley
kwiley@snm.org
703-326-1184
Society of Nuclear Medicine
PET outperforms CT in characterization of lung nodules
Multi-institutional study comparing the diagnostic accuracy of PET and CT is featured in February Journal of Nuclear Medicine

Reston, Va.—Researchers involved in a large, multi-institutional study comparing the accuracy of positron emission tomography (PET) and computed tomography (CT) in the characterization of lung nodules found that PET was far more reliable in detecting whether or not a nodule was malignant.

“CT and PET have been widely used to characterize solitary pulmonary nodules (SPNs) as benign or malignant,” said James W. Fletcher, professor of radiology at Indiana University School of Medicine in Indianapolis, Ind. “Almost all previous studies examining the accuracy of CT for characterizing lung nodules, however, were performed more than 15 years ago with outdated technology and methods, and previous PET studies were limited by small sample sizes,” he noted.

“Detecting and characterizing SPNs is important because malignant nodules represent a potentially curable form of lung cancer. Identifying which SPNs are most likely to be malignant enables physicians to initiate the proper therapy before local or distant metastases develop,” said Fletcher.

In a head-to-head study addressing the limitations of previous studies, PET and CT images on 344 patients were independently interpreted by a panel of experts in each imaging modality, and their determination of benign and malignant nodules were compared to pathologic findings or changes in SPN size over the next two years.

The researchers found that when PET and CT results were interpreted as “probably” or “definitely” benign, the results were “strongly associated with a benign final diagnosis”—in other words, the modalities were equally good at making this determination. PET’s superior specificity (accuracy in characterizing a nodule as benign or malignant), however, resulted in correctly classifying 58 percent of the benign nodules that had been incorrectly classified as malignant on CT. Furthermore, when PET interpreted SPNs as definitely malignant, a malignant final diagnosis was 10 times more likely than a benign.

SPNs are commonly encountered in both primary and specialty settings, often showing up on chest X-rays obtained for some other purpose than cancer screening and are often the first manifestation of lung cancer. The question for these patients then becomes whether to undergo surgery, undergo a needle biopsy or “watch and wait” to find out if the nodule is benign or malignant but treatable.

“In patients with an untreated and undiagnosed SPN between 7 and 30 millimeters, PET provides better identification of malignant nodules that require a more aggressive treatment approach,” said Fletcher. “PET in combination with CT can also provide good identification of those nodules that are most likely to be benign, suggesting that a ‘watch and wait’ strategy can be adopted in lieu of unnecessary invasive—and expensive—procedures such as needle biopsy or surgery,” he added.

According to the American Cancer Society, lung cancer is the leading cause of cancer deaths in both men and women in the United States, with approximately 155,000 deaths each year. Although the survival rate is 49 percent for cases detected when the disease is still localized, only 16 percent of lung cancer cases are diagnosed at this early stage. Recently, almost 7 percent of 1,000 healthy volunteers in New York who participated in the Early Lung Cancer Action Project were found to have between one and three nodules on baseline screening X-rays.

###

Co-authors of “A Comparison of the Diagnostic Accuracy of F18-FDG PET and CT in the Characterization of Solitary Pulmonary Nodules” include Fletcher; Steven M. Kymes, department of ophthalmology and visual sciences, Washington University School of Medicine, St. Louis, Mo.; Michael Gould, department of Veterans Affairs, Palo Alto Health Care System and department of medicine; George Segall, department of Veterans Affairs, Palo Alto Health Care System and department of radiology, Stanford School of Medicine, Stanford, Calif.; Naomi Alazraki, department of radiology, Emory University School of Medicine, Atlanta, Ga.; R. Edward Coleman, department of radiology, Duke University School of Medicine, Durham, N.C.; Val. J. Lowe, department of radiology, Mayo Clinic, Rochester, Minn.; Charles Marn, department of radiology and Lyn A. Thet, department of medicine, University of Wisconsin School of Medicine, Madison, Wis.; Kelvin Lee, department of Veterans Affairs, Cooperative Studies Program Coordinating Center, Palo Alto, Calif.

Credentialed media: To obtain a copy of this article—and online access to the Journal of Nuclear Medicine— please contact Kathryn Wiley by phone at (703) 326-1184 or send an e-mail to kwiley@snm.org. Current and past issues of the Journal of Nuclear Medicine can be found online at http://jnm.snmjournals.org. Print copies can be obtained by contacting the SNM Service Center, 1850 Samuel Morse Drive, Reston, VA 20190-5316; phone (800) 513-6853; e-mail servicecenter@snm.org; fax (703) 708-9015. A subscription to the journal is an SNM member benefit.

About SNM—Advancing Molecular Imaging and Therapy

SNM is an international scientific and professional organization of more than 16,000 members dedicated to promoting the science, technology and practical applications of molecular and nuclear imaging to diagnose, manage and treat diseases in women, men and children. Founded more than 50 years ago, SNM continues to provide essential resources for health care practitioners and patients; publish the most prominent peer-reviewed journal in the field (Journal of Nuclear Medicine); host the premier annual meeting for medical imaging; sponsor research grants, fellowships and awards; and train physicians, technologists, scientists, physicists, chemists and radiopharmacists in state-of-the-art imaging procedures and advances. SNM members have introduced—and continue to explore—biological and technological innovations in medicine that noninvasively investigate the molecular basis of diseases, benefiting countless generations of patients. SNM is based in Reston, Va.; additional information can be found online at http://www.snm.org.


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